Publication List

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1. Sugiura, M.: A study on respiration of bean seed embryo. Bot. Mag. Tokyo, 74, l9-27 (l96l)
2. Sugiura, M. and Y. Sunobe: Phosphorus compounds and phytase in germinating bean, Vigna sesquipedalis. Bot. Mag. Tokyo, 75, 63-71 (l962)
3. Sugiura, M., K. Umemura and Y. Oota: The effect of kinetin on protein level of tobacco leaf disks. Physiologia Plantarum, l5, 457-464 (l962)
4. Sugiura, M.: Effect of red and far-red light on protein and phosphate metabolism in tobacco leaf disks. Bot. Mag. Tokyo, 76, l74-l80 (l963)
5. Sugiura, M.: Promotion of chlorophyll synthesis by kinetin. Bot. Mag. Tokyo, 76, 309-3l0 (l963)
6. Sugiura, M.: Inhibitory effect of kinetin on respiration of tobacco leaf disks. Bot. Mag. Tokyo, 76, 359-362 (l963)
7. Sugiura, M. and M. Takanami: Analysis of the 5'-terminal nucleotide sequences of ribonucleic acids, II. Comparison of the 5'-terminal nucleotide sequences of ribosomal RNA's from different organisms. Proc. Natl. Acad. Sci. USA, 58, l595-l602 (l967)
8. Sugiura, M.: Transfer of the genetic information of bacteriophage ��X-l74 in a cell-free system. Bulletin of the Institute for Chemical Research, Kyoto University, 46, l29-l39 (l968)
9. Bryan, R.N., M. Sugiura and M. Hayashi: DNA-dependent RNA-directed protein synthesis in vitro, I. Extent of genome transcription. Proc. Natl. Acad. Sci. USA, 62, 483-489 (l969)
10. Sugiura, M., T. Okamoto and M. Takanami: Starting nucleotide sequences of RNA synthesized on the replicative form DNA of coliphage fd. J. Mol. Biol., 43, 299-3l5 (l969)
11. Okamoto, T., M. Sugiura and M. Takanami: Length of RNA transcribed on the replicative form DNA of coliphage fd. J. Mol. Biol., 45, 101-111 (l969)
12. Sugiura, M., T. Okamoto and M. Takanami: RNA polymerase s-factor and the selection of initiation site. Nature, 225, 598-600 (l970)
13. Okamoto, T., M. Sugiura and M. Takanami: Characterization of ribonucleic acid transcribed in vitro on phage ��80 deoxyribonucleic acid. Biochem., 9, 3533-354l(l970)
14. Takanami, M., T. Okamoto and M. Sugiura: The starting nucleotide sequences and size of RNA transcribed in vitro on phage DNA templates. Cold Spring Harbor Symposia on Quantitative Biology, 35, l79-l87 (l970)
15. Takanami, M., T. Okamoto and M. Sugiura: Termination of RNA transcription on the replicative form DNA of bacteriophage fd. J. Mol. Biol., 62, 8l-88 (l97l)
16. Okamoto, T., M. Sugiura and M. Takanami: RNA polymerase binding sites of phage fd replicative form DNA. Nature New Biology, 237, l08-l09 (l972)
17. Miura, K., K. Watanabe and M. Sugiura: 5'-terminal nucleotide sequences of the double-stranded RNA of silkworm cytoplasmic polyhedrosis virus. J. Mol. Biol.,86, 3l-48 (l974)
18. Miura, K., K. Watanabe, M. Sugiura and A.J. Shatkin: The 5'-terminal nucleotide sequences of the double-stranded RNA of human reovirus. Proc. Nat. Acad. Sci. USA, 7l, 3979-3983 (l974)
19. Miura, K., Y. Furuichi, K. Shimotohno, T. Urushibara and M. Sugiura: Synthesis of viral messenger RNA carrying a unique modified structure. Proceedings of the Tenth FEBS Meeting, 95-l08 (l975)
20. Miura, K., Y. Furuichi, K. Shimotohno, T. Urushibara, K. Watanabe and M. Sugiura: Modification at the 5'-terminus of messenger RNA strand. Les Colloq.de INSERM, 47, l53-l60 (l975)
21. Sakuma, K., R. Kominami, M. Muramatsu and M. Sugiura: Conservation of the 5'-terminal nucleotide sequences of ribosomal l8-S RNA in eukaryotes: differential evolution of large and small ribosomal RNA. Eur. J. Biochem., 63, 339-350 (l976)
22. Ohtsuka, E., S. Nishikawa, M. Sugiura and M. Ikehara: Joining of ribooligonucleotides with T4 RNA ligase and identification of the oligonucleotide-adenylate intermediate. Nucl. Acids Res., 3, l6l3-l623 (l976)
23. Sugiura, M. and K. Miura: Transcription of double-stranded RNA by Escherichia coli DNA-dependent RNA polymerase. Eur. J. Biochem., 73, l79-l84 (l977)
24. Sugiura, M., K. Segawa, K. Yoshinaga, F. Yu, N. Ito, S. Yasuda and Y. Hirota: A temperature-sensitive mutant of Escherichia coli with an altered RNA polymerase b' subunit. Biochem. Biophys. Res. Commun. 76, 739-745 (l977)
25. Yoshinaga, K. and M. Sugiura: Physiological studies on a temperature-sensitive Escherichia coli mutant with an altered RNA polymerase b'-subunit. Biochim.Biophys. Acta, 479, l72-l79 (l977)
26. Ohtsuka, E., S. Nishikawa, R. Fukumoto, S. Tanaka, A.F. Markham, M. Ikehara and M. Sugiura: Joining of synthetic ribotrinucleotides with defined sequences catalyzed by T4 RNA ligase. Eur. J. Biochem., 8l, 285-29l (l977)
27. Sugiura, M., N. Ito and M. Suzuki: A simple method for the identification of altered subunits in mutant RNA polymerases of Escherichia coli. Anal. Biochem., 84, 337-339 (l978)
28. Ohtsuka, E., S. Nishikawa, A.F. Markham, S. Tanaka, T. Miyake, T. Wakabayashi, M. Ikehara and M. Sugiura: Joining of 3'-modified oligonucleotides by T4 RNA ligase. Synthesis of a heptadecanucleotide corresponding to the bases 6l-77 from Escherichia coli tRNAfMet. Biochem., l7, 4894-4899 (l978)
29. Sugiura, M., M. Suzuki, E. Ohtsuka, S. Nishikawa, H. Uemura and M. Ikehara: Purification of T4 RNA ligase by 2', 5'-ADP sepharose chromatography. FEBS Lett., 97, 73-76 (l979)
30. Sugiura, M. and J. Kusuda: Molecular cloning of tobacco chloroplast ribosomal RNA genes. Mol. Gen. Genet., l72, l37-l4l (l979)
31. Oono, K. and M. Sugiura: Heterogeneity of the ribosomal RNA gene clusters in rice. Chromosoma (Berl.), 76, 85-89 (l980)
32. Sugiura, M. and K. Oono: Detection of the proplastid ribosomal RNA genes in rice embryos. Plant Sci. Lett., l8, l3-l7 (l980)
33. Ohtsuka, E., T. Miyake, K. Nagao, H. Uemura, S. Nishikawa, M. Sugiura and M. Ikehara: Elongation of oligonucleotides in the 3'-direction with activated mononucleotides and their analogs using RNA ligase. Nucl. Acids Res., 8, 60l-6l0 (l980)
34. Takaiwa, F., N. Tohdoh and M. Sugiura: Molecular cloning of an EcoRI fragment which contains 4.5S and 5S RNA genes in tobacco chloroplasts. Japan. J. Genet., 55, l2l-l25 (l980)
35. Kusuda, J., K. Shinozaki, F. Takaiwa and M. Sugiura: Characterization of the cloned ribosomal DNA of tobacco chloroplasts. Mol. Gen. Genet., l78, l-7 (l980)
36. Takaiwa, F. and M. Sugiura: Cloning and characterization of 4.5S and 5S RNA genes in tobacco chloroplasts. Gene, l0, 95-l03 (l980)
37. Sugiura, M.: Existence of the gene for 4.5S RNA in broad bean chloroplast DNA. Curr. Genet., 2, 95-96 (l980)
38. Takaiwa, F. and M. Sugiura: The nucleotide sequence of 4.5S ribosomal RNA from tobacco chloroplasts. Nucl. Acids Res., 8, 4l25-4l29 (l980)
39. Sugiura, M., J. Kusuda, K. Shinozaki and F. Takaiwa: Cloning and characterization of chloroplast ribosomal RNA genes. In "Genetics and Evolution of RNA Polymerase, tRNA and Ribosomes" (S. Osawa et al., eds), University of Tokyo Press, pp.437-449 (l980)
40. Sugiura, M. and Y. Hotta: EcoRI analysis of nuclear and plastid ribosomal DNAs in lily. Plant Cell Physiol., 2l, 1129-1132 (l980)
41. Takaiwa, F. and M. Sugiura: Nucleotide sequences of the 4.5S and 5S ribosomal RNA genes from tobacco chloroplasts. Mol. Gen. Genet., l80, l-4 (l980)
42. Sugiura, M.: Purification of the T4 DNA ligase by blue sepharose chromatography. Anal. Biochem., l08, 227-229 (l980)
43. Sugiura, M.: An Escherichia coli acid phosphatase which hydrolyzes preferentially nucleoside 3',5'-diphosphates. FEBS Lett., l23, 285-286 (l98l)
44. Takaiwa, F. and M. Sugiura: Heterogeneity of 5S RNA species in tobacco chloroplasts. Mol. Gen. Genet., l82, 385-389 (l98l)
45. Tohdoh, N., K. Shinozaki and M. Sugiura: Sequence of a putative promoter region for the rRNA genes of tobacco chloroplast DNA. Nucl. Acids Res., 9, 5399-5406 (l98l)
46. Kato, A., H. Shimada, M. Kusuda and M. Sugiura: The nucleotide sequences of two tRNAAsn genes from tobacco chloroplasts. Nucl. Acids Res., 9, 560l-5607 (l98l)
47. Tomioka, N., K. Shinozaki and M. Sugiura: Molecular cloning and characterization of ribosomal RNA genes from a blue-green alga, Anacystis nidulans. Mol. Gen. Genet., l84, 359-363 (l98l)
48. Tohdoh, N. and M. Sugiura: The complete nucleotide sequence of a l6S ribosomal RNA gene from tobacco chloroplasts. Gene, l7, 2l3-2l8 (l982)
49. Takaiwa, F. and M. Sugiura: The complete nucleotide sequence of a 23-S rRNA gene from tobacco chloroplasts. Eur. J. Biochem., l24, l3-l9 (l982)
50. Takaiwa, F., M. Kusuda and M. Sugiura: The nucleotide sequence of chloroplast 4.5S rRNA from a fern, Dryopteris acuminata. Nucl. Acids Res., l0, 2257-2260 (l982)
51. Takaiwa, F. and M. Sugiura: Nucleotide sequence of the l6S-23S spacer region in an rRNA gene cluster from tobacco chloroplast DNA. Nucl. Acids Res., l0, 2665-2676 (l982)
52. Shinozaki, K. and M. Sugiura: Sequence of the intercistronic region between the ribulose-l,5-bisphosphate carboxylase/oxygenase large subunit and the coupling factor b subunit gene. Nucl. Acids Res., l0, 4923-4934 (l982)
53. Shinozaki, K., N. Tomioka, C. Yamada and M. Sugiura: Cloning and characterization of a plasmid DNA from Anacystis nidulans 630l. Gene, l9, 22l-224 (l982)
54. Uchimiya, H., H. Kato, T. Ohgawara, H. Harada and M. Sugiura: Sequence- specific methylation of ribosomal RNA genes contained in the nuclear DNA of tobacco. Plant Cell Physiol., 23, 1129-113l (l982)
55. Takaiwa, F. and M. Sugiura: The nucleotide sequence of chloroplast 5S ribosomal RNA from a fern, Dryopteris acuminata. Nucl. Acids Res., l0, 5369-5373 (l982)
56. Shinozaki, K. and M. Sugiura: The nucleotide sequence of the tobacco chloroplast gene for the large subunit of ribulose-l,5-bisphosphate carboxylase/oxygenase. Gene, 20, 9l-l02 (l982)
57. Takaiwa, F., M. Kusuda, N. Saga and M. Sugiura: The nucleotide sequence of 5S rRNA from a red alga, Porphyra yezoensis. Nucl. Acids Res., l0, 6037-6040 (l982)
58. Deno, H., A. Kato, K. Shinozaki and M. Sugiura: Nucleotide sequences of tobacco chloroplast genes for elongator tRNAMet and tRNAVal(UAC): the tRNAVal(UAC) gene contains a long intron. Nucl. Acids Res., l0, 7511-7520 (l982)
59. Sun, C-R., T. Endo, M. Kusuda and M. Sugiura: Molecular cloning of the genes for ribosomal RNAs from broad bean chloroplast DNA. Japan. J. Genet., 57, 397-402 (l982)
60. Yoshinaga, K., M. Kusuda and M. Sugiura: Characterization of a temperature-sensitive Escherichia coli RNA polymerase with an altered b' subunit. Reports of Faculty of Science, SHIZUOKA UNIVERSITY, l7, 5l-56 (l983)
61. Sugita, M. and M. Sugiura: A putative gene of tobacco chloroplast coding for ribosomal protein similar to E. coli ribosomal protein Sl9. Nucl. Acids Res., 11, 1913-1918 (l983)
62. Uchimiya, H., T. Ohgawara, H. Kato, T. Akiyama, H. Harada and M. Sugiura: Detection of two different nuclear genomes in parasexual hybrids by ribosomal RNA gene analysis. Theor. Appl. Genet., 64, 117-118 (l983)
63. Deno, H., K. Shinozaki and M. Sugiura: Nucleotide sequence of tobacco chloroplast gene for the a subunit of proton-translocating ATPase. Nucl. Acids Res., 11, 2185-2191 (l983)
64. Ohyama, K., Y. Yamano, H. Fukuzawa, T. Komano, H. Yamagishi, S. Fujimoto and M. Sugiura: Physical mappings of chloroplast DNA from liverwort Marchantia polymorpha L. cell suspension cultures. Mol. Gen. Genet., l89, 1-9 (l983)
65. Tomioka, N. and M. Sugiura: The complete nucleotide sequence of a l6S ribosomal RNA gene from a blue-green alga, Anacystis nidulans. Mol. Gen. Genet., l9l, 46-50 (l983)
66. Shinozaki, K., C. Yamada, N. Takahata and M. Sugiura: Molecular cloning and sequence analysis of the cyanobacterial gene for the large subunit of ribulose-l, 5-bisphosphate carboxylase/oxygenase. Proc. Natl. Acad. Sci. USA, 80, 4050-4054 (l983)
67. Kumano, M., N. Tomioka and M. Sugiura: The complete nucleotide sequence of a 23S rRNA gene from a blue-green alga, Anacystis nidulans. Gene, 24, 2l9-225 (l983)
68. Shinozaki, K., H. Deno, A. Kato and M. Sugiura: Overlap and cotranscription of the genes for the beta and epsilon subunits of tobacco chloroplast ATPase. Gene, 24, l47-l55 (l983)
69. Shinozaki, K. and M. Sugiura: The gene for the small subunit of ribulose-l, 5-bisphosphate carboxylase/oxygenase is located close to the gene for the large subunit in the cyanobacterium Anacystis nidulans 630l. Nucl. Acids Res., 11, 6957-6964 (l983)
70. Uchimiya, H., T. Ohtani, T. Ohgawara, H. Harada, M. Sugita and M. Sugiura: Molecular cloning of tobacco chromosomal and chloroplast DNA segments capable of replication in yeast. Mol. Gen. Genet., l92, l-4 (l983)
71. Deno, H. and M. Sugiura: The nucleotide sequences of tRNASer(GCU) and tRNAGln(UUG) genes from tobacco chloroplasts. Nucl. Acids Res., 11, 8407-84l4 (l983)
72. Deno, H. and M. Sugiura: Chloroplast tRNAGly gene contains a long intron in the D stem: nucleotide sequences of tobacco chloroplast genes for tRNAGly(UCC) and tRNAArg(UCU). Proc. Natl. Acad. Sci. USA, 8l, 405-408 (l984)
73. Tomioka, N. and M. Sugiura: Nucleotide sequence of the l6S-23S spacer region in the rrnA operon from a blue-green alga, Anacystis nidulans. Mol. Gen. Genet., l93, 427-430 (l984)
74. Ohtani T., H. Uchimiya, A. Kato, H. Harada, M. Sugita and M. Sugiura: Location and nucleotide sequence of a tobacco chloroplast DNA segment capable of replication in yeast. Mol. Gen. Genet., l95, l-4 (l984)
75. Sugita, M., A. Kato, H. Shimada and M. Sugiura: Sequence analysis of the junctions between a large inverted repeat and single-copy regions in tobacco chloroplast DNA. Mol. Gen. Genet., l94, 200-205 (l984)
76. Sugita, M. and M. Sugiura: Nucleotide sequence and transcription of the gene for the 32,000 dalton thylakoid membrane protein from Nicotiana tabacum. Mol. Gen. Genet., l95, 308-3l3 (l984)
77. Deno, H. and M. Sugiura: Homology between the a and b subunits of chloroplast and bacterial proton-translocating ATPases. FEBS Lett., l72, 209-2ll (l984)
78. Hori, H., S. Osawa, F. Takaiwa and M. Sugiura: The nucleotide sequences of 5S rRNAs from a fern Dryopteris acuminata and a horsetail Equisetum arvense. Nucl. Acids Res., l2, l573-l576 (l984)
79. Takaiwa, F., K. Oono and M. Sugiura: The complete nucleotide sequence of a rice l7S rRNA gene. Nucl. Acids Res., l2, 544l-5448 (l984)
80. Mikami, T., M. Sugiura and T. Kinoshita: Molecular heterogeneity in mitochondrial and chloroplast DNAs from normal and male sterile cytoplasms in sugar beets. Curr. Genet., 8, 3l9-322 (l984)
81. Mikami, T., Y. Kishima, M. Sugiura and T. Kinoshita: Chloroplast DNA diversity in the cytoplasms of sugar beet and its related species. Plant Sci. Lett., 36, 23l-235 (l984)
82. Mikami, T., K. Shinozaki, M. Sugiura and T. Kinoshita: Characterization of chloroplast DNA from sugar beet with normal and male sterile cytoplasms. Jpn. J. Genet., 59, 497-504 (l984)
83. Deno, H., K. Shinozaki and M. Sugiura: Structure and transcription pattern of a tobacco chloroplast gene coding for subunit III of proton-translocating ATPase. Gene, 32, l95-20l (l984)
84. Shinozaki, K., C.R. Sun and M. Sugiura: Gene organization of chloroplast DNA from the broad bean Vicia faba. Mol. Gen. Genet., l97, 363-367 (l984)
85. Ohme, M., T. Kamogashira, K. Shinozaki and M. Sugiura: Locations and sequences of tobacco chloroplast genes for tRNAPro(UGG), tRNATrp, tRNAfMet and tRNAGly(GCC): the tRNAGly contains only two base-pairs in the D stem. Nucl. Acids Res., l2, 674l-6749 (l984)
86. Ohme, M., T. Kamogashira, K. Shinozaki and M. Sugiura: Structure and cotranscription of tobacco chloroplast genes for tRNAGlu(UUC), tRNATyr(GUA) and tRNAAsp(GUC). Nucl. Acids Res., l3, l045-l056 (l985)
87. Sugiura, M., K. Shinozaki and M. Ohme: Tobacco chloroplast genes for transfer RNAs. In "Molecular Form and Function of the Plant Genome" (L. van Vloten-Doting, G.S.P. Groot and T.C. Hall, eds), Plenum Press, New York, pp.325-334 (l985)
88. Kato, A., F. Takaiwa, K. Shinozaki and M. Sugiura: Location and nucleotide sequence of the genes for tobacco chloroplast tRNAArg(ACG) and tRNALeu(UAG). Curr. Genet., 9, 405-409 (l985)
89. Takaiwa, F., K. Oono and M. Sugiura: Nucleotide sequence of the l7S-25S spacer region from rice rDNA. Plant. Mol. Biol., 4, 355-364 (l985)
90. Takaiwa, F., K. Oono, Y. Iida and M. Sugiura: The complete nucleotide sequence of a rice 25SorRNA gene. Gene, 37, 255-259 (l985)
91. Hirai, A., T. Ishibashi, A. Morikami, N. Iwatsuki, K. Shinozaki and M. Sugiura: Rice chloroplast DNA: a physical map and the location of the genes for the large subunit of ribulose l,5-bisphosphate carboxylase and the 32 KD photosystem II reaction center protein. Theor. Appl. Genet., 70, 117-l22 (l985)
92. Shinozaki, K. and M. Sugiura: Genes for the large and small subunits of ribulose-l, 5-bisphosphate carboxylase/oxygenase constitute a single operon in a cyanobacterium Anacystis nidulans 630l. Mol. Gen. Genet., 200, 27-32 (l985)
93. Sugita, M., K. Shinozaki and M. Sugiura: Tobacco chloroplast tRNALys(UUU) gene contains a 2.5-kilobase-pair intron: an open reading frame and a conserved boundary sequence in the intron. Proc. Natl. Acad. Sci. USA, 82, 3557-3561 (1985)
94. Mikami, T., Y. Kishima, M. Sugiura and T. Kinoshita: Organelle genome diversity in sugar beet with normal and different sources of male sterile cytoplasms. Theor. Appl. Genet., 71, 166-171 (1985)
95. Shinozaki, K., H. Deno, M. Sugita, S. Kuramitsu and M. Sugiura: Intron in the gene for the ribosomal protein Sl6 of tobacco chloroplast and its conserved boundary sequences. Mol. Gen. Genet., 202, 1-5 (l986)
96. Yamada, K., K. Shinozaki and M. Sugiura: DNA sequences of tobacco chloroplast genes for tRNASer(GGA), tRNAThr(UGU), tRNALeu(UAA), tRNAPhe(GAA): the tRNALeu gene contains a 503 bp intron. Plant Mol. Biol., 6, 193-199 (l986)
97. Shinozaki, K. and M. Sugiura: Organization of chloroplast genomes. Adv. in Biophys., Vol. 21, (M. Kotani ed), pp.57-78 (1986)
98. Shinozaki, K., H. Deno, T. Wakasugi and M. Sugiura: Tobacco chloroplast gene coding for subunit I of proton- translocating ATPase: comparison with the wheat subunit I and E. coli subunit b. Curr. Genet., 10, 421-423 (l986)
99. Kumano, M., N. Tomioka, K. Shinozaki and M. Sugiura: Analysis of the promoter region in the rrnA operon from a blue-green alga, Anacystis nidulans 6301. Mol. Gen. Genet., 202, 173-178 (l986)
100. Torazawa, K., N. Hayashida, J. Obokata, K. Shinozaki and M.Sugiura: The 5' part of the gene for ribosomal protein S12 is located 30 kbp downstream from its 3' part in tobacco chloroplast genome. Nucl. Acids Res., 14, 3143 (1986)
101. Ohme, M., M. Tanaka, J. Chunwongse, K. Shinozaki and M. Sugiura: A tobacco chloroplast DNA sequence possibly coding for a polypeptide similar to E. coli RNA polymerase b-subunit. FEBS Lett., 200, 87-90 (1986)
102. Sugiura, M., K. Shinozaki, N. Zaita, M. Kusuda and M. Kumano: Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: mapping of eleven ribosomal protein genes. Plant Sci., 44, 211-216 (1986)
103. Tanaka, M., T. Wakasugi, M. Sugita, K. Shinozaki and M. Sugiura: Genes for the eight ribosomal proteins are clustered on the chloroplast genome of tobacco (Nicotiana tabacum): similarity to the S10 and spc operons of Escherichia coli. Proc. Natl. Acad. Sci. USA, 83, 6030-6034 (1986)
104. Shinozaki, K., M. Ohme, M. Tanaka, T. Wakasugi, N. Hayashida, T. Matsubayashi, N. Zaita, J. Chunwongse, J. Obokata, K. Yamaguchi-Shinozaki, C. Ohto, K. Torazawa, B. Y. Meng, M. Sugita, H. Deno, T. Kamogashira, K. Yamada, J. Kusuda, F. Takaiwa, A. Kato, N. Tohdoh, H. Shimada and M. Sugiura: The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J., 5, 2043-2049 (1986)
105. Shinozaki, K., M. Ohme, M. Tanaka, T. Wakasugi, N. Hayashida, T. Matsubayashi, N. Zaita, J. Chunwongse, J. Obokata, K. Yamaguchi-Shinozaki, C. Ohto, K. Torazawa, B.Y. Meng, M. Sugita, H. Deno, T. Kamogashira, K. Yamada, J. Kusuda, F. Takaiwa, A. Kato, N. Tohdoh, H. Shimada and M. Sugiura: The complete nucleotide sequence of the tobacco chloroplast genome. Plant Mol. Biol. Rep., 4, 110-147 (1986)
106. Kishima, Y., T. Mikami, T. Harada, K. Shinozaki, M. Sugiura and T. Kinoshita: Restriction fragment map of sugar beet (Beta vulgaris L.) chloroplast DNA. Plant Mol. Biol. 7, 201-205 (1986)
107. Wakasugi, T., M. Ohme, K. Shinozaki and M. Sugiura: Structures of tobacco chloroplast genes for tRNAIle(CAU), tRNALeu(CAA), tRNACys(GCA), tRNASer(UGA) and tRNAThr(GGU): a compilation of tRNA genes from tobacco chloroplasts. Plant Mol. Biol. 7, 385-392 (1986)
108. Meng, B.Y., T. Matsubayashi, T. Wakasugi, K. Shinozaki, M. Sugiura, A. Hirai, T. Mikami, Y. Kishima and T. Kinoshita: Ubiquity of the genes for components of a NADH dehydrogenase in higher plant chloroplast genomes. Plant Sci., 47, 181-184 (1986)
109. Kishima, Y., T. Mikami, A. Hirai, M. Sugiura and T. Kinoshita: Beta chloroplast genomes: analysis of Fraction I protein and chloroplast DNA variation. Theor. Appl. Genet. 73, 330-336 (1987)
110. Zaita, N., K. Torazawa, K. Shinozaki and M. Sugiura: Trans splicing in vivo: joining of transcripts from the "divided" gene for ribosomal protein S12 in the chloroplasts of tobacco. FEBS Lett., 210, 153-156 (1987)
111. Yamaguchi-Shinozaki, K., K. Shinozaki and M. Sugiura: Processing of precursor tRNAs in a chloroplast lysate: processing of the 5'-end involves endonucleolytic cleavage by an RNase P-like enzyme and precedes 3'-end maturation. FEBS Lett., 215, 132-136 (1987)
112. Hayashida, N., T. Matsubayashi, K. Shinozaki, M. Sugiura, K. Inoue and T. Hiyama: The gene for the 9 kd polypeptide, a possible apoprotein for the iron-sulfur centers A and B of the photosystem I complex, in tobacco chloroplast DNA. Curr. Genet., 12, 247-250 (1987)
113. Tanaka, M., J. Obokata, J. Chunwongse, K. Shinozaki and M. Sugiura: Rapid splicing and stepwise processing of a transcript from the psbB operon in tobacco chloroplasts. Mol. Gen. Genet., 209, 427-431 (1987)
114. Matsubayashi, T., T. Wakasugi, K. Shinozaki, K. Yamaguchi-Shinozaki, N. Zaita, T. Hidaka, B.Y. Meng, C. Ohto, M. Tanaka, A. Kato, T. Maruyama and M. Sugiura: Six chloroplast genes (ndhA-F) homologous to human mitochondrial genes encoding components of the respiratory chain NADH dehydrogenase are actively expressed: determination of the splice sites in ndhA and ndhB pre-mRNAs. Mol. Gen. Genet., 210, 385-393 (1987)
115. Sugiura, M.: Structure and function of the tobacco chloroplast genome. Bot. Mag. Tokyo, 100, 407-436 (1987)
116. Sugiura, M., K. Shinozaki, M. Tanaka, N. Hayashida, T. Wakasugi, T. Matsubayashi, C. Ohto, K. Torazawa, B.Y. Meng, T. Hidaka and N. Zaita: Split genes and cis/trans splicing in tobacco chloroplasts. In "Plant Molecular Biology" (D.von Wettstein and N.H. Chua, eds), Plenum, New York, pp.65-76 (1987)
117. Murata, N., M. Miyao, N. Hayashida, T. Hidaka and M. Sugiura: Identification of a new gene in the chloroplast genome encoding a low-molecular-mass polypeptide of photosystem II complex. FEBS Lett., 235, 283-288 (1988)
118. Yoshinaga, K., T. Ohta, Y. Suzuki and M. Sugiura: Chlorella chloroplast DNA sequence containing a gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a part of a possible gene for the b' subunit of RNA polymerase. Plant Mol. Biol., 10, 245-250 (1988)
119. Meng, B.Y., M. Tanaka, T. Wakasugi, M. Ohme, K. Shinozaki and M. Sugiura: Cotranscription of the genes encoding two P700 chlorophyll a apoproteins with the gene for ribosomal protein CS14: determination of the transcriptional initiation site by in vitro capping. Curr. Genet., 14, 395-400 (1988)
120. Shinozaki, K., N. Hayashida and M. Sugiura: Nicotiana chloroplast genes for components of the photosynthetic apparatus. Photosynth. Res., 18, 7-31 (1988)
121. Ohto, C., K. Torazawa, M. Tanaka, K. Shinozaki and M. Sugiura: Transcription of ten ribosomal protein genes from tobacco chloroplasts: a compilation of ribosomal protein genes found in the tobacco chloroplast genome. Plant Mol. Biol., 11, 589-600 (1988)
122. Sugiura, M.: The chloroplast genome. In "The Biochemistry of Plants" Vol. 15, Molecular Biology, (A. Marcus, ed), Academic Press, New York, pp.133-150 (1989)
123. Sugiura, M.: Organization and expression of the Nicotiana chloroplast genome. In "Plant Biotechnology" (S.D. Kung and C.J. Arntzen, eds), Butterworths, Boston, pp.295-315 (1989)
124. Sugiura, M. and T. Wakasugi: Compilation and comparison of transfer RNA genes from tobacco chloroplasts. Critical Rev. Plant Sci., 8, 89-101 (1989)
125. Meng, B.Y., K. Shinozaki and M. Sugiura: Genes for the ribosomal proteins S12 and S7 and elongation factors EF-G and EF-Tu of the cyanobacterium, Anacystis nidulans: Structural homology between 16S rRNA and S7 mRNA. Mol. Gen. Genet., 216, 25-30 (1989)
126. Sugiura, M.: Organization and expression of the tobacco and rice chloroplast genomes. In "Highlights of Modern Biochemistry" (A. Kotyk, J. Skoda, V. Paces and V. Kostka, eds), VSP International Science Publishers, Zeist, pp.695-704 (1989)
127. Hiratsuka, J., H. Shimada, R. Whittier, T. Ishibashi, M. Sakamoto, M. Mori, C. Kondo, Y. Honji, C.R. Sun, B.Y. Meng, Y.Q. Li, A. Kanno, Y. Nishizawa, A. Hirai, K. Shinozaki and M. Sugiura: The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol. Gen. Genet., 217, 185-194 (1989)
128. Sugiura, M.: The chloroplast chromosomes in land plants. Annu. Rev. Cell Biol., 5, 51-70 (1989)
129. Shimada, H. and M. Sugiura: Pseudogenes and short repeated sequences in the rice chloroplast genome. Curr. Genet., 16, 293-301 (1989)
130. Fukuda, M., B.Y. Meng, N. Hayashida and M. Sugiura: Nucleotide sequence of the psbK gene of the cyanobacterium, Anacystis nidulans 6301. Nucl. Acids Res., 17, 7521 (1989)
131. Shimada, H., R.F. Whittier, J. Hiratsuka, Y. Maeda, A. Hirai and M. Sugiura: A physical map and clone bank of the rice (Oryza sativa) chloroplast genome. Plant Mol. Biol. Rep., 7, 284-291 (1989)
132. Yao, W.B., B.Y. Meng, M. Tanaka and M. Sugiura: An additional promoter within the protein-coding region of the psbD-psbC gene cluster in tobacco chloroplast DNA. Nucl. Acids Res., 17, 9583-9591 (1989)
133. Obokata, J., K. Mikami, N. Hayashida and M. Sugiura: Polymorphism of a photosystem I subunit caused by alloploidy in Nicotiana. Plant Physiol., 92, 273-275 (1990)
134. Chen, J.C., B.Y. Meng, M. Fukuta and M. Sugiura: Nucleotide sequence of the psbl gene of the cyanobacterium, Anacystis nidulans 6301. Nucl. Acids. Res., 18, 4017 (1990)
135. Shimada, H., M. Fukuta, M. Ishikawa and M. Sugiura: Rice chloroplast RNA polymerase genes: The absence of an intron in rpoC1 and the presence of an extra sequence in rpoC2. Mol. Gen. Genet., 221, 395-402 (1990)
136. Li, Y. and M. Sugiura: Three distinct ribonucleoproteins from tobacco chloroplasts: each contains a unique amino terminal acidic domain and two ribonucleoprotein consensus motifs. EMBO J., 9, 3059-3066 (1990)
137. Yokoi, F., A. Vassileva, N. Hayashida, K. Torazawa, T. Wakasugi and M. Sugiura: Chloroplast ribosomal protein L32 is encoded in the chloroplast genome. FEBS Lett., 276, 88-90 (1990)
138. Sugiura, M.: Organization of monocot and dicot chloroplast genomes. In "Current Research in Photosynthesis", Vol.III (M. Baltscheffsky, ed), Kluwer Academic Publishers, the Netherlands, pp.469-474 (1990)
139. Obokata, J., K. Mikami, N. Hayashida and M. Sugiura: Nuclear-coded subunits of PSI in Nicotiana. In "Current Research in Photosynthesis", Vol. III (M. Baltscheffsky, ed), Kluwer Academic Publishers, the Netherlands, pp.767-770 (1990)
140. Shimada, H. and M. Sugiura: Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. Nucl. Acids Res., 19, 983-995 (1991)
141. Senda, M., T. Harada, T. Mikami, M. Sugiura and T. Kinoshita: Genomic organization and sequence analysis of the cytochrome oxidase subunit II gene from normal and male-sterile mitochondria in sugar beet. Curr. Genet., 19, 175-181 (1991)
142. Yokoi, F., M. Tanaka, T. Wakasugi and M. Sugiura: The chloroplast gene for ribosomal protein CL23 is functional in tobacco. FEBS Lett., 281, 64-66 (1991)
143. Li, Y. and M. Sugiura: Nucleic acid-binding specificities of tobacco chloroplast ribonucleoproteins. Nucl. Acids Res., 19, 2893-2896 (1991)
144. Li, Y., L. Ye, M. Sugita and M. Sugiura: Tobacco nuclear gene for the 31 kd chloroplast ribonucleoprotein: genomic organization, sequence analysis and expression. Nucl. Acids Res., 19, 2987-2991 (1991)
145. Kobayashi, H., A.M. Viale, T. Takabe, T. Akazawa, K. Wada, K. Shinozaki, K. Kobayashi and M. Sugiura: Sequence and expression of genes encoding the large and small subunits of ribulose 1,5-bisphosphate carboxylase/oxygenase from Chromatium vinosum. Gene, 97, 55-62 (1991)
146. Meng, B.Y., T. Wakasugi and M. Sugiura: Two promoters within the psbK-psbI- trnG gene cluster in tobacco chloroplast DNA. Curr. Genet., 20, 259-264 (1991)
147. Ye, L., Y. Li, K. Fukami-Kobayashi, M. Go, T. Konishi, A. Watanabe and M. Sugiura: Diversity of a ribonucleoprotein family in tobacco chloroplasts: two new chloroplast ribonucleoproteins and a phylogenetic tree of ten chloroplast RNA-binding domains. Nucl. Acids Res., 19, 6485-6490 (1991)
148. Sugiura, M.: Transcript processing in plastids: trimming, cutting, splicing. In "Cell Culture and Somatic Cell Genetics of Plants", Vol.7A 'The Molecular Biology of Plastids' (L. Bogorad and I.K. Vasil, eds), Academic Press, San Diego, pp.125-137 (1991)
149. Sugiura, M.: Structural analysis of chloroplast DNA. In "Biotechnology Current Progress" (P.N. Cheremisinoff and L.M. Ferrante, eds), Technomic Publishing Co., Inc., Lancaster, pp.337-354 (1991)
150. Sugiura, M., K. Torazawa and T. Wakasugi: Chloroplast genes coding for ribosomal proteins in land plants. In "The Translational Apparatus of Photosynthetic Organelles" (R. Mache, E. Stutz and A.R. Subramanian, eds), Springer-Verlag, Berlin, pp.59-69 (1991)
151. Whittier, R.F. and M. Sugiura: Plastid chromosomes from vascular plants - genes. In "Plant Gene Research-Cell Organelles" (R.G. Herrmann, ed), Springer-Verlag, Wien, pp.164-182 (1992)
152. Tsudzuki, J., K. Nakashima, T. Tsudzuki, J. Hiratsuka, M. Shibata, T. Wakasugi and M. Sugiura: Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16. Mol. Gen. Genet., 232, 206-214 (1992)
153. Sugiura, M.: The chloroplast genome. In "10 years in Plant Molecular Biology" (R. Schilperoort and L. Dure, eds), Plant Mol. Biol., 19, 149-168 (1992)
154. Vera, A., T. Matsubayashi and M. Sugiura: Active transcription from a promoter positioned within the coding region of a divergently oriented gene: the tobacco chloroplast rpl32 gene. Mol. Gen. Genet., 233, 151-156 (1992)
155. Vera, A. and M. Sugiura: Combination of in vitro capping and ribonuclease protection improves the detection of transcription start sites in chloroplasts. Plant Mol. Biol., 19, 309-311 (1992)
156. Li, Y., H. Itadani, M. Sugita and M. Sugiura: cDNA cloning and sequencing of tobacco chloroplast ribosomal protein L12. FEBS Lett., 300, 199-202 (1992)
157. Yokoi, F. and M. Sugiura: Tobacco chloroplast ribosomes contain a homologue of E. coliribosomal protein L28. FEBS Lett., 308, 258-260 (1992)
158. Hayashida, N., S. Izuchi, M. Sugiura and J. Obokata: Nucleotide sequence of cDNA clones encoding the PS I-H subunit of photosystem I in tobacco. Plant Cell Physiol., 33, 1031-1034 (1992)
159. Ye, L. and M. Sugiura: Domains required for nucleic acid binding activities in chloroplast ribonucleoproteins. Nucl. Acids Res., 20, 6275-6279 (1992)
160. Sugiura, M.: The chloroplast genome from crop plants. In "Agricultural Biotechnology" (C. You and Z. Chen, eds), China Science and Technology Press, Beijing, pp.63-69 (1992)
161. Sugiura, M., M. Sugita, Y. Li, L. Ye, M. Ohta and T. Wakasugi: RNA-binding proteins from chloroplasts. In "Agricultural Biotechnology" (C. You and Z. Chen, eds), China Science and Technology Press, Beijing, pp.282-285 (1992)
162. Vera, A. and M. Sugiura: A new class of RNA encoded in the chloroplast genome. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.247-250 (1992)
163. Yokoi, F. and M. Sugiura: Nuclear and chloroplast encoded ribosomal proteins of tobacco chloroplasts. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.251-254 (1992)
164. Wakasugi, T., B.Y. Meng, T. Matsubayashi, A. Vera, K. Torazawa and M. Sugiura: Transcription map of the tobacco chloroplast genome. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.263-266 (1992)
165. Ohta, M., Y. Li, M. Sugita and M. Sugiura: The structure and expression of chloroplast ribonucleoprotein genes from Arabidopsis thaliana. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.275-278 (1992)
166. Sugita, M. and M. Sugiura: Nucleic acid-binding proteins containing a consensus sequence-type RNA-binding domain of the cyanobacterium Anacystis nidulans. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.279-282 (1992)
167. Ye, L. and M. Sugiura: Nucleic acid-binding activities of chloroplast ribonucleoproteins. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.283-286 (1992)
168. Matsubayashi, T. and M. Sugiura: Isolation and characterization of extrinsic and intrinsic thylakoid membrane proteins from tobacco chloroplasts: Where is the NADH dehydrogenase components in chloroplasts? In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.343-346 (1992)
169. Tsudzuki, J., S. Itoh, T. Wakasugi, T. Tsudzuki, K. Nakashima, M. Shibata and M. Sugiura: Genes for photosynthetic components in black pine chloroplast DNA. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.389-392 (1992)
170. Gawronski, S.W., M. Sugita and M. Sugiura: Mutation of psbA gene in herbicide resistant populations of Erigeron canadensis. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.405-407 (1992)
171. Seki, M., N. Shigemoto, M. Sugita, M. Sugiura, H.U. Koop, K. Irifune and H. Morikawa: Chloroplast transformation by particle bombardment. In "Research in Photosynthesis", Vol.III (N. Murata, ed), Kluwer Academic Publishers, Dordrecht, pp.413-416 (1992)
172. Li, Y., S. Nagayoshi, M. Sugita and M. Sugiura: Structure and expression of the tobacco nuclear gene encoding the 33 kDa chloroplast ribonucleoprotein. Mol. Gen. Genet., 239, 304-309 (1993)
173. Mitsui, S. and M. Sugiura: Purification and properties of cytokinin-binding proteins from tobacco leaves. Plant Cell Physiol., 34, 543-547 (1993)
174. Murayama, Y., T. Matsubayashi, M. Sugita and M. Sugiura: Purification of chloroplast elongation factor Tu and cDNA analysis in tobacco: the existence of two chloroplast elongation factor Tu species. Plant Mol. Biol., 22, 767-774 (1993)
175. Sugiura, M., M. Sugita, T. Wakasugi, Y. Li, L. Ye and K. Torazawa: Organization and expression of the chloroplast genome from higher plants. The Proceedings of Endocytobiology V (H. Ishikawa, ed), Tubingen University Press, Tubingen, pp.307-312 (1993)
176. Vera, A., F. Yokoi and M. Sugiura: The existence of pre-mature 16S rRNA species in plastid ribosomes. FEBS Lett., 327, 29-31 (1993)
177. Mitsui, S., T. Wakasugi and M. Sugiura: A cDNA encoding the 57 kDa subunit of a cytokinin-binding protein complex from tobacco: the subunit has high homology to S-adenosyl-L-homocysteine hydrolase. Plant Cell Physiol., 34, 1089-1096 (1993)
178. Hirose, T., M. Sugita and M. Sugiura: cDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: occurence of tissue-specific alternative splicing. Nucl. Acids Res., 21, 3981-3987 (1993)
179. Obokata, J., K. Mikami, N. Hayashida, M. Nakamura and M. Sugiura: Molecular heterogeneity of photosystem I. Plant Physiol., 102, 1259-1267 (1993)
180. Sugita, M. and M. Sugiura: The existence of eukaryotic ribonucleoprotein consensus sequence-type RNA-binding proteins in a prokaryote, Synechococcus 6301. Nucl. Acids Res., 22, 25-31 (1994)
181. Sugita, M., Y. Murayama and M. Sugiura: Structure and differential expression of two distinct genes encoding the chloroplast elongation factor Tu in tobacco. Curr. Genet., 25, 164-168 (1994)
182. Itadani, H., M. Sugita and M. Sugiura: Structure and expression of a cDNA encoding an RNA helicase-like protein in tobacco. Plant Mol. Biol., 24, 249-252 (1994)
183. Tsudzuki, J., S. Ito, T. Tsudzuki, T. Wakasugi and M. Sugiura: A new gene encoding tRNAPro(GGG) is present in the chloroplast genome of black pine: a compilation of 32 tRNA genes from black pine chloroplasts. Curr. Genet., 26: 153-158 (1994)
184. Hirose, T., M. Sugita and M. Sugiura: Characterization of a cDNA encoding a novel type of RNA-binding protein in tobacco: its expression and nucleic acid-binding properties. Mol. Gen. Genet., 244, 360-366 (1994)
185. Fukuta, M., T. Wakasugi and M. Sugiura: Nucleotide sequence of a putative sensory kinase gene from the cyanobacterium, Anacystis nidulans 6301. DNA Res., 1, 97-98 (1994)
186. Vera, A. and M. Sugiura: A novel RNA gene in the tobacco plastid genome: its possible role in the maturation of 16S rRNA. EMBO J., 13, 2211-2217 (1994)
187. Kapoor, S., T. Wakasugi, H. Deno and M. Sugiura: An atpE-specific promoter within the coding region of the atpB gene in tobacco chloroplast DNA. Curr. Genet., 26, 263-268 (1994)
188. Wakasugi, T., J. Tsudzuki, S. Ito, K. Nakashima, T. Tsudzuki and M. Sugiura: Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine, Pinus thunbergii. Proc. Natl. Acad. Sci. USA, 91, 9794-9798 (1994)
189. Wakasugi, T., J. Tsudzuki, S. Ito, M. Shibata and M. Sugiura: A physical map and clone bank of the black pine (Pinus thunbergii) chloroplast genome. Plant Mol. Biol. Rep., 12, 227-241 (1994)
190. Hirose, T., T. Wakasugi, M. Sugiura and H. Kossel: RNA editing of tobacco petB mRNAs occurs both in chloroplasts and non-photosynthetic proplastids. Plant Mol. Biol., 26, 509-513 (1994)
191. Takeshima, Y., M. Sugiura and H. Hagiwara: A novel expression vector for the cyanobacterium, Synechococcus PCC 6301. DNA Res., 1, 181-189 (1994)
192. Takeshima, Y., N. Takatsugu, M. Sugiura and H. Hagiwara: High-level expression of human superoxide dismutase in the cyanobacterium Anacystis nidulants 6301. Proc. Natl. Acad.Sci. USA, 91, 9685-9689 (1994)
193. Itadani, H., T. Wakasugi, M. Sugita, M. Sugiura, M. Nakazono and A. Hirai: Nucleotide sequence of a 28-kbp portion of rice mitochondrial DNA: the existence of many sequences that correspond to parts of mitochondrial genes in intergenic regions. Plant Cell Physiol., 35, 1239-1244 (1994)
194. Kotani, H., T. Kaneko, T. Matsubayashi, S. Sato, M. Sugiura and S. Tabata: A physical map of the genome of a unicellular cyanobacterium Synechocystis sp. strain PCC6803. DNA Res. 1, 303-307 (1994)
195. Nakazono. M., H. Itadani, T. Wakasugi, N. Tsutsumi, M. Sugiura and A. Hirai: The rps3-rp116-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters. Curr. Genet., 27, 184-189 (1995)
196. Vera, A. and M. Sugiura: Chloroplast rRNA transcription from structurally different tandem promoters: an additional novel-type promoter. Curr. Genet., 27, 280-284 (1995)
197. Ohta, M., M. Sugita and M. Sugiura: Three types of nuclear genes encoding chloroplast RNA-binding proteins (cp29, cp31 and cp33) are present in Arabidopsis thaliana: presence of cp31 in chloroplasts and its homologue in nuclei/cytoplasms. Plant Mol. Biol., 27, 529-539 (1995)
198. Sugita, M., C. Sugita and M. Sugiura: Structure and expression of the gene encoding ribosomal protein S1 from the cyanobacterium Synechococcus sp. strain PCC 6301: striking sequence similarity to the chloroplast ribosomal protein CS1. Mol. Gen. Genet., 246, 142-147 (1995)
199. Nakazono, M., N. Tsutsumi, M. Sugiura and A. Hirai: A small repeated sequence contains the transcription initiation sites for both trnfM and rrn26 in rice mitochondria. Plant Mol. Biol., 28, 343-346 (1995)
200. Sugiura, M.: The chloroplast genome. In "Essays in Biochemistry" (D. K. Apps and K. F. Tipton, eds), Portland Press, London, pp. 49-57 (1995)
201. Fan, H. and M. Sugiura: A plant basal in vitro system supporting accurate transcription of both RNA polymerase II- and III- dependent genes: supplement of green leaf component(s) drives accurate transcription of a light-responsive rbcS gene. EMBO J., 14, 1024-1031 (1995)
202. Fan, H., and M. Sugiura: A simple method for preparation of labeled single-stranded DNA using Taq polymerase. Asia Pacific J. Mol. Biol. Biotech., 3, 74-75 (1995)
203. Fan, H., K. Yakura, M. Miyanishi, M. Sugita and M. Sugiura: In vitro transcription of plant RNA polymerase I-dependent rRNA genes is species-specific. Plant J., 8, 295-298 (1995)
204. Sugita, M., L. Luo, M. Ohta, H. Itadani, T. Matsubayashi and M. Sugiura: Genes encoding the group I intron-containing tRNALeu and subunit L of NADH dehydrogenase from the cyanobacterium Synechococcus PCC 6301. DNA Res., 2, 71-76 (1995)
205. Kotani, H., A. Tanaka, T. Kaneko, S. Sato, M. Sugiura and S. Tabata: Assignment of 82 known genes and gene clusters on the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. DNA Res., 2, 133-142 (1995)
206. Kaneko, T., A. Tanaka, S. Sato, H. Kotani, T. Sazuka, N. Miyajima, M. Sugiura and S. Tabata: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. sequence features in the 1 Mb region from map positions 64% to 92% of the genome. DNA Res., 2, 153-166 (1995)
207. Seki, M., N. Shigemoto, M. Sugita, M. Sugiura, H-U. Koop, K. Irifune and H. Morikawa: Transient expression of b-glucuronidase in plastids of various plant cells and tissues delivered by a pneumatic particle gun. J. Plant Res., 108, 235-240 (1995)
208. Sugita, M., M. Ohta and M. Sugiura: Structure and function of RNA-binding proteins in chloroplasts and cyanobacteria. In "Tracing Biological Evolution in Protein and Gene Structures" (M. Go and P. Schimmel, eds), Elsevier, Amsterdam, pp. 77-86 (1995)
209. Sugita, M., C. Sugita and M. Sugiura: Molecular characterization of cyanobacterial RNA-binding proteins: structures of 12RNP1 and 12RNP2 genes from Synechococcus sp. strain PCC7942. In "Photosynthesis: from Light to Biosphere" Vol. III (P. Mathis, ed), Kluwer Academic Publishers, The Netherlands, pp. 525-528 (1995)
210. Tsudzuki, J., K. Nakashima, M. Ito, T. Tsudzuki, M. Horihata, K. Satoh, K. Yoshinaga, T. Wakasugi, T. Nagai, M. Kapoor and M. Sugiura: Chloroplast genome structure of unicellular green alga Chlorella vulgaris C-27. In "Photosynthesis: from Light to Biosphere" Vol. III (P. Mathis, ed), Kluwer Academic Publishers, The Netherlands, pp. 643-646 (1995)
211. Tsudzuki, T., T. Hirose, H. Fan, J.Y. Suzuki, T. Wakasugi, H. Kossel and M. Sugiura: RNA editing in atpA and atpF transcripts from tobacco: occurence of silent editing in chloroplasts. In "Photosynthesis: from Light to Biosphere" Vol. III (P. Mathis, ed), Kluwer Academic Publishers, The Netherlands, pp. 687-690 (1995)
212. Hirose, T., M. Sugita and M. Sugiura: In vivo and in vitro analysis of translation of psbA transcripts in tobacco chloroplasts. In "Photosynthesis: from Light to Biosphere" Vol. III (P. Mathis, ed), Kluwer Academic Publishers, The Netherlands, pp. 695-698 (1995)
213. Mitsui, S., T. Wakasugi and M. Sugiura: A cytokinin-binding protein complex from tobacco leaves. Plant Growth Reg., 18, 39-43 (1996)
214. Hirose, T., H. Fan, J. Y. Suzuki, T. Wakasugi, T. Tsudzuki, H. Kossel and M. Sugiura: Occurrence of silent RNA editing in chloroplasts: its species-specificity and the influence of environmental and developmental conditions. Plant Mol. Biol., 30, 667-672 (1996)
215. Hirose, T. and M. Sugiura: Cis-acting elements and trans-acting factors for accurate translation of chloroplast psbA mRNAs: development of an in vitro translation system from tobacco chloroplasts. EMBO J., 15, 1687-1695 (1996)
216. Sugiura, M.: Plant in vitro transcription: the opening of a new era. Trends in Plant Sci., 1, 41 (1996)
217. Fan, H. and M. Sugiura: Basal and activated in vitro transcription in plants by RNA polymerase II and III. Methods in Enzymol., 273, 268-277 (1996)
218. Hanano, S., M. Sugita, and M. Sugiura: Isolation of a novel RNA-binding protein and its association with a large ribonucleoprotein particle present in the nucleoplasm of tobacco cells. Plant Mol. Biol., 31, 57-68 (1996)
219. Hanano, S., M. Sugita and M. Sugiura: Structure and expression of the tobacco nuclear gene encoding RNA-binding protein RZ-1: The existence of an intron in the 3'-untranslated region. DNA Res., 3, 65-71 (1996)
220. Sugiura, M.: Structure and replication of chloroplast DNA. In "Frontiers in Molecular Biology: Molecular Genetics of Photosynthesis" (B. Andersson, A. H. Salter and J. Barber, eds), IRL Press, Oxford, pp. 58-74 (1996)
221. Sugita, M. and M. Sugiura: Regulation of gene expression in chloroplasts of higher plants. In "Post-Transcriptional Control of Plant Gene Expression" (W. Filipowicz and T. Hohn, eds), Plant Mol. Biol., 32, 315-326 (1996)
222. Kapoor, M., T. Wakasugi, K. Yoshinaga and M. Sugiura: The chloroplast chlL gene of the green alga Chlorella vulgaris C-27 contains a self-splicing group I intron. Mol. Gen. Genet., 250, 655-664 (1996)
223. Kaneko, T., T. Matsubayashi, M. Sugita and M. Sugiura: Physical and gene maps of the unicellular cyanobacterium Synechococcus sp. strain PCC6301 genome. Plant Mol. Biol., 31, 193-201 (1996)
224. Nohara, T., T. Asai, M. Nakai, M. Sugiura and T. Endo: Cytochrome f encoded by the chloroplast genome is imported into thylakoids via the SecA-dependent pathway. FEBS Lett., 224, 474-478 (1996)
225. Wakasugi, T., T. Hirose, M. Horihata, T. Tsudzuki, H. Kossel and M. Sugiura: Creation of a novel protein-coding region at the RNA level in black pine chloroplasts. The pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms. Proc. Natl. Acad. Sci. USA, 93, 8766-8770 (1996)
226. Vera, A., T. Hirose and M. Sugiura: A ribosomal protein gene (rpl32) from tobacco chloroplast DNA is transcribed from alternative promoters: similarities in promoter region organization in plastid housekeeping genes. Mol. Gen. Genet., 251, 518-525 (1996)
227. Kaneko, T., S. Sato, H. Kotani, A. Tanaka, E. Asamizu, Y. Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, T. Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, S. Okumura, S. Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda and S. Tabata: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res., 3, 109-136 (1996)
228. Fujishiro, T., T. Kaneko, M. Sugiura and M. Sugita: Organization and transcription of a putative gene cluster encoding ribosomal protein S14 and an oligopeptide permease-like protein in the cyanobacterium Synechococcus sp. strain PCC 6301. DNA Res., 3, 165-169 (1996)
229. Sugiura, M.: Plant in vitro transcription systems. Annu. Rev. Plant Physiol. Plant Mol. Biol., 48, 383-398 (1997)
230. Kapoor, S., J. Y. Suzuki and M. Sugiura: Identification and functional significance of a new class of non-consensus-type plastid promoters. Plant J., 11, 327-337 (1997)
231. Sugita, M., H. Sugishita, T. Fujishiro, M. Tsuboi, C. Sugita, T. Endo and M. Sugiura: Organization of a large gene cluster encoding ribosomal proteins in the cyanobacterium Synechococcus sp. strain PCC6301: comparison of gene clusters among cyanobacteria, eubacteria and chloroplast genomes. Gene, 195, 73-79 (1997)
232. Moriguchi, K., M. Sugita and M. Sugiura: Structure and subcellular localization of a small RNA-binding protein from tobacco. Plant J., 12, 215-221 (1997)
233. Kapoor, M., T. Nagai, T. Wakasugi, K. Yoshinaga and M. Sugiura: Organization of chloroplast ribosomal RNA genes and in vitro self-splicing activity of the large subunit rRNA intron from the green alga, Chlorella vulgaris C-27. Curr. Genet., 31, 503-510 (1997)
234. Wakasugi, T., T. Nagai, M. Kapoor, M. Sugita, M. Ito, S. Ito, J. Tsudzuki, K. Nakashima, T. Tsudzuki, Y. Suzuki, A. Hamada, T. Ohta, A. Inamura, K. Yoshinaga and M. Sugiura: Complete sequencing of the chloroplast genome of the green alga Chlorella vulgaris reveals the existence of genes possibly involved in chloroplast division. Proc. Natl. Acad. Sci. USA, 94, 5967-5972 (1997)
235. Mitsui, S., T. Wakasugi, S. Hanano and M. Sugiura: Localization of a cytokinin-binding protein CBP57/S-adenosyl-L-homocysteine hydrolase in a tobacco root. J. Plant Physiol., 150, 752-754 (1997)
236. Yukawa, Y., M. Sugita and M. Sugiura: Efficient in vitro transcription of plant nuclear tRNASer genes in a nuclear extract from tobacco cultured cells. Plant J., 12, 965-970 (1997)
237. Hirose, T., M. Sugiura: Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA: a possible regulatory mechanism for expression of a chloroplast operon consisting of functionally unrelated genes. EMBO J., 16, 6804-6811 (1997)
238. Watanabe, T., M. Sugiura and M. Sugita: A novel small stable RNA, 6Sa RNA, from thecyanobacterium Synechococcus sp. strain PCC6301. FEBS Lett., 416, 302-306 (1997)
239. Sugita, M., Z. Svab, P. Maliga and M. Sugiura: Targeted deletion of sprA from the tobacco plastid genome indicates that the encoded small RNA is not essential for pre-16S rRNA maturation in plastids. Mol. Gen. Genet., 257, 23-27 (1997)
240. Kapoor, S. and M. Sugiura: Expression and regulation of plastid genes. In "Photosynthesis: A Comprehensive Treatise" (A.R. Raghavenda, ed), Cambridge Univ. Press, U.K., pp. 72-86 (1998)
241. Watanabe, T., M. Sugita, and M. Sugiura: Identification of 10Sa RNA (tmRNA) homologues from the cyanobacterium Synechococcus sp. strain PCC6301 and related organisms. Biochim. Biophys. Acta, 1396, 97-104 (1998)
242. Miyagi, T., S. Kapoor, M. Sugita and M. Sugiura: Transcript analysis of tobacco plastid operon rps2/atpI/H/F/A reveals the existence of a non-consensus type (NCII) promoter upstream to atpI coding sequence. Mol. Gen. Genet., 257, 299-307 (1998)
243. Sugiura, M.: The discovery of the complete sequence of tobacco and rice chloroplast genomes. In "Discoveries in Plant Biology" (S.D. Kung and S.F. Yang, eds) vol. 2, World Scientific, Singapore, pp. 45-60 (1998)
244. Akama, K., Y. Yukawa, M. Sugiura and I. Small: Plant cytosolic tRNAHis possesses an exceptional C54 in the canonical TYC loop. Nucl. Acids. Res., 26, 2708-2714 (1998)
245. Hirose, T., T. Kusumegi and M. Sugiura: Translation of tobacco chloroplast rps14 mRNA depends on a Shine-Dalgarno-like sequence in the 5�-untranslated region but not on internal RNA editing in the coding region. FEBS Lett., 430, 257-260 (1998)
246. Sugiura, M., T. Hirose and M. Sugita: Evolution and mechanism of translation in chloroplasts. Annu. Rev. Genetics, 32, 437-459 (1998)
247. Wakasugi, T., M. Sugita, T. Tsudzuki and M. Sugiura: Updated gene map of tobacco chloroplast DNA. Plant Mol. Biol. Rep., 16, 231-241 (1998)
248. Sugiura, M., T. Kusumegi, H. Sugishita, K. Murakami, T. Ideue and T. Hirose: Translational control of photosynthetic genes in tobacco plastids. In "Photosynthesis: Mechanisms and Effects" Vol. IV (G. Garab, ed), Kluwer Academic Publishers, the Netherlands, pp. 2943-2946 (1998)
249. Tsudzuki, T., J. Tsudzuki, K. Nakashima, T. Wakasugi, T. Hirose, M. Sugita, and M. Sugiura: Newly identified genes in tobacco plastid genome. In "Photosynthesis: Mechanisms and Effects" Vol. IV (G. Garab, ed), Kluwer Academic Publishers, the Netherlands, pp. 2953-2956 (1998)
250. Mutsuda, M., T. Hirose, M. Sugiura and M. Sugita: The function of the cyanobacterial RNA-binding proteins. In "Photosynthesis: Mechanisms and Effects" Vol. IV (G. Garab, ed), Kluwer Academic Publishers, the Netherlands, pp. 2937-2940 (1998)
251. Hasegawa, K., Y. Yukawa, M. Niwa, M. Sugita and M. Sugiura: Structure and expression of Lhcb genes from Nicotiana sylvestris. In "Photosynthesis: Mechanisms and Effects" Vol. IV (G. Garab, ed), Kluwer Academic Publishers, the Netherlands, pp. 2959-2962 (1998)
252. Nakamura, T., M. Ohta, M. Sugita and M. Sugiura: Characterization of ribonucleoproteins from the tobacco chloroplast. In "Photosynthesis: Mechanisms and Effects" Vol. IV (G. Garab, ed), Kluwer Academic Publishers, the Netherlands, pp. 2957-2958 (1998)
253. Yukawa, Y., M. Sugita and M. Sugiura: In vitro transcription analysis of the rbcS gene. In "Photosynthesis: Mechanisms and Effects" Vol. IV (G. Garab, ed), Kluwer Academic Publishers, the Netherlands, pp. 2963-2966 (1998)
254. Hirose, T., T. Ideue, T. Wakasugi and M. Sugiura: The chloroplast infA gene with a functional UUA initiation codon. FEBS Lett., 445, 169-172 (1999)
255. Sugiura, M.: From plastid to cyanobacterial genomes. In "The Phototrophic Prokaryotes" (G.A. Peschek, W. Loffelhardt, and G. Schmetterer, eds.), Kluwer Academic/Plenum Publishers, New York, pp. 411-420 (1999)
256. Kapoor, S. and M. Sugiura: Identification of two essential sequence elements in the nonconcensus type II PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells. Plant Cell, 11, 1799-1810 (1999)
257. Sugita, C., M. Mutsuda, M. Sugiura and M. Sugita: Targeted deletion of genes for eukaryotic RNA-binding proteins, Rbp1 and Rbp2, in cyanobacterium Synechococcus sp. strain PCC7942: Rbp1 is indispensable for cell growth at cold temperatures. FEMS Microbiol. Lett., 176, 155-161 (1999)
258. Nakamura, T., M. Ohta, M. Sugiura and M. Sugita: Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs. FEBS Lett., 460, 437-441 (1999)
259. Hirose, T., T. Kusumegi, T. Tsudzuki and M. Sugiura: RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity. Mol. Gen. Genet., 262, 462-467 (1999)
260. Mutsuda, M., M. Sugiura and M. Sugita: Physiological characterization of RNA-binding protein deficient cells from Synechococcus sp. strain PCC 7942. Plant Cell Physiol., 40, 1203-1209 (1999)
261. Sugiura, M.: Phytogene sequence: From cyanobacteia to plastids. In "From Symbiosis to Eukaryotism-Endocytobiology VII" (E. Wagner et al., eds), Univ Geneva Press, 121-136 (2000)
262. Yukawa, Y., M. Sugita, N. Choisne, I.D. Small and M. Sugiura: The TATA motif, the CAA motif and the Poly(T) transcription termination motif are all important for transcription re-initiation on plant tRNA genes. Plant J., 22, 439-447 (2000)
263. Akama, K., V. Junker, Y. Yukawa, M. Sugiura and H. Beier: Splicing of Arabidopsis tRNAMet precursors in tobacco cell and wheat germ extracts. Plant Mol. Biol., 44, 155-165 (2000)
264. Sugita, C., M. Sugiura and M. Sugita: A novel nucleic acid-binding protein in the cyanobacterium Synechococcus sp. PCC6301: a soluble 33-kDa polypeptide with high sequence similarity to ribosomal protein S1. Mol. Gen. Genet., 263, 655-663 (2000)
265. Sugiura, M. and Y. Takeda: Nucleic Acids. In "Biochemistry & Molecular Biology of Plants" (B. Buchanan, W. Gruissem and R. Jones, eds.), American Society of Plant Physiologists, pp. 260-310 (2000)
266. Nakamura T., M. Ohta, M. Sugiura and M. Sugita: Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma. J. Biol. Chem., 276,147-152 (2001)
267. Arnaud, P., Y. Yukawa, L. Lavie, T. Pelissier, M. Sugiura and J.-M. Deragon: Analysis of the SINE S1 Pol III promoter from Brassica; impact of methylation and influence of external sequences. Plant J., 26, 295-305 (2001)
268. Hirose, T. and M. Sugiura: Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system. EMBO J., 20, 1144-1152 (2001)
269. Tsudzuki, T., T. Wakasugi and M. Sugiura: Comparative analysis of RNA editing sites in higher plant chloroplasts. J. Mol. Evol., 53, 327-332 (2001)
270. Wakasugi, T., T. Tsudzuki and M. Sugiura: The genomics of land plant chloroplasts: Gene content and alternation of genomic information by RNA editing. Photosynthesis Res. 70: 107-118 (2001)
271. Yukawa, Y., H. Fan, K. Akama, H. Beier, H.J. Gross and M. Sugiura: A tobacco nuclear extract supporting transcription, processing, splicing and modification from plant intron-containing tRNA precursors. Plant J., 28, 583-594 (2001)
272. Kobayashi, Y., Y. Dokiya, M. Sugiura, Y. Niwa and M. Sugita: Genomic organization and organ-specific expression of a nuclear gene encoding phage-type RNA polymerase in Nicotiana sylvestris. Gene, 279: 33-40 (2001)
273. Miyamoto, T., J. Obokata, T. Wakasugi, and M. Sugiura: In vitro analysis of cis-elements and trans-factors for the RNA editing of tobacco chloroplast psbE and petB mRNAs. PS2001 Proceedings: 12th International Congress on Photosynthesis. CSIRO Publishing, Melbourne, Australia (2001)
274. Tsudzuki, J., T. Tsudzuki, T. Wakasugi, K. Kinoshita, T. Kondo and M. Sugiura: The entire gene organization of rice chloroplast DNA---2001 update. PS2001 Proceedings: 12th International Congress on Photosynthesis. CSIRO Publishing, Melbourne, Australia (2001)
275. Sugita, M., T. Tsudzuki, C. Sugita, M. Ishiura, K. Ogata, H. Jikuya, J. Takano and M. Sugiura: Genome analysis of Synechococcus sp. strain PCC6301. PS2001 Proceedings: 12th International Congress on Photosynthesis. CSIRO Publishing, Melbourne, Australia (2001)
276. Hasegawa, K., Y. Yukawa, M. Sugita and M. Sugiura: Organization and transcription of the gene family encoding chlorophyll a/b-binding proteins in Nicotiana sylvestris. Gene, 289: 161-168 (2002)
277. Mathieu, O., Y. Yukawa, M. Suigura, G. Picard and S. Tourmente: 5S rRNA genes expression is not controlled by DNA methylation in Arabidopsis. Plant J. 29: 313-323 (2002)
278. Yukawa, Y., Matousek, M. Grimm, L. Vrba, G. Steger, M. Sugiura, H. Beier: Plant 7SL RNA and tRNATyr genes with inserted antisense sequences are efficiently expressed in tobacco nuclear extract. Plant Mol. BIol., 50: 713-723 (2002)
279. Miyamoto, T., J. Obokata and M. Sugiura: Recognition of RNA editing sites is directed by unique proteins in chloroplasts: Biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in Tobacco and pea chloropalsts. Mol. Cell. Biol., 22: 6726-6734(2002)
280. M. Sugiura: History of chloroplast genomics. Photosynthesis Res. (Historical Highlights of Photosynthesis Research, Part 2), 76: 371-377 (2003)
281. Sasaki, T., Y. Yukawa, T. Miyamoto, J. Obokata, M. Sugiura: Identification of RNA editing sites in chloroplasts transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. Mol. Biol. Evol.,�@in press (2003)
282. Hasegawa, K., Y. Yukawa, M. Sugiura: In vitro analysis of transcription initiation and termination from the Lhcb1 gene family in Nicotiana sylvestris: detection of transcription termination sites. Plant J., 33: 1063-1072(2003)
283. Plader, W. and M. Sugiura: The Shine-Dalgarno-like sequence is a negative regulatory element for translation of tobacco chloroplast rps2 mRNA: an additional mechanism for translational control in chloroplasts. Plant J., 34: 1-6(2003)
284. Hasegawa, K., Y. Yukawa, J. Obokata and M. Sugiura: A tRNALeu-like sequence located immediately upstream of an Arabidopsis clock-regulated gene is transcriptionally active: efficient transcription by an RNA polymerase III-dependent in vitro transcription system. Gene, 307: 133-139 (2003)
285. Kapoor, S., M. Sugita and M. Sugiura: In vitro characterization of plastid NCII promoter element by using plastid transcription extracts from tobacco BY-2 cultured cells. In "Molecular Insight in Plant Biology" (P. Nath et al., eds), Science Publishers, Inc., UK, pp.85-95 (2003)
286. Yukawa, Y. and M. Sugiura: In vitro transcription system from BY-2 cells. In "Biotechnology in Agriculture and Forestry", vol. "BY-2 cells" (T. Nagata, S. Hagezawa and D. Inze eds), Springer, Heidelberg, pp.256-282 (2003)
287. Nakamura, T., Y. Furuhashi, K. Hasegawa, H. Hashimoto, K. Watanabe, J. Obokata, M. Sugita and M. Sugiura: Array-based analysis on tobacco plastid transcripts: preparation of a genomic microarray containing all genes and all intergenic regions. Plant Cell Physiol., 44: 861-867 (2003)
288. Cloix, C., Y. Yukawa, S. Tutois, M. Sugiura and S. Tourmente: In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 5S rRNA genes. Plant J., 35: 251-261 (2003)
289. Mathiew, O., Y. Yukawa, J.-L. Prieto, I. Vaillant, M. Sugiura and S. Tourmente: Identification and characterization of transcription factor IIIA and ribosomal protein L5 from Arabidopsis thaliana. Nucleic Acids Research, 31: 2424-2433 (2003)
290. Sugiyama, Y., Y. Watase, M. Nagase, A. Hirai and M. Sugiura: Timing of tRNA gene transfer from chloroplast to mitochondrion revealed by genomic analysis of dicotyledonous plant mitochondria. Endocytobiosis Cell Res., 15: 77-86(2004)
291. Tsudzuki, J., T. Tsudzuki, T. Wakasugi, K. Kinoshita, T. Kondo and M. Sugiura: Comparative analysis of the whole chloroplast genomes from rice, maize and wheat. Endocytobiosis Cell Res., 15: 339-344(2004)
292. Hirose, T., T. Miyamoto, J. Obokata and M. Sugiura: In vitro RNA editing systems from higher plant chloroplasts. In "RNA Interference, Editing and Modification" (J. M. Cott ed), Humana Press, Totowa, USA, pp.333-344 (2004)
293. Miyamoto, T., J. Obokata and M. Sugiura: A site-specific factor interacts directly with its cognate RNA editing site in chloroplast transcripts. Proc. Natl. Acad. Sci. USA, 101: 48-52 (2004)
294. Hirose, T. and M. Sugiura: Functional Shine-Dalgarno-like sequences for translational initiation of chloroplast mRNAs. Plant Cell Physiol., 45: 114-117(2004)
295. Hirose, T. and M. Sugiura: Multiple elements required for translation of plastid atpB mRNA lacking the Shine-Dalgarno sequence. Nucleic Acids Res., 32: 3503-3510 (2004)
296. Inada, M., T. Sasaki, M. Yukawa, T. Tsudzuki and M. Sugiura: A systematic search for RNA editing sites in pea chloroplasts: an editing event causes the diversification from the evolutionarily conserved amino acid sequence. Plant Cell Physiol., 45: 1615-1622 (2004)
297. Sugiyama, Y., Y. Watase, M. Nagase, N. Makita, S. Yagura, A. Hirai, A and M. Sugiura: The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants. Mol. Gen. Genomics, 272: 603-615 (2005)
298. Yukawa, Y., M. Felis, M. Englert, M. Stojanov, J. Matousek, H. Beier and M. Sugiura: Plant 7SL RNA genes belong to type 4 of RNA polymerase III-dependent genes that are composed of mixed promoters. Plant J., in press (2005)
299. International Rice Genome Sequencing Project (one of the 263 participants): The map-based sequence of the rice genome. Nature 436: 793-800 (2005)
300. Yukawa, M., T. Tsudzuki and M. Sugiura: The 2005 version of the chloroplast DNA sequence from tobacco (Nicotiana tabacum). Plant Mol. Boil. Rep. 23: 1-7 (2005)
301. Yukawa, M., T. Tsudzuki and M. Sugiura: The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: Complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum. Mol. Gen. Genomics, 275: 367-373 (2006)
302. Giorgio Dieci, Y. Yukawa, M. Alzapiedi, E. Guffanti, R. Ferrari, M. Sugiura and S. Ottonello: Distinct modes of TATA box utilization by the RNA polymerase III transcription machineries from budding yeast and higher plants. Gene, 379: 12-25 (2006)
303. Sasaki, T., Y. Yukawa, T. Wakasugi, K. Yamada and M. Sugiura: A simple in vitro RNA editing assay for chloroplast transcripts using fluorescent dideoxynucleotides: Distinct types of sequence elements required for editing of ndh transcripts. Plant J., 47: 802-810 (2006)
304. Mutsuda, M. and M. Sugiura: Translation initiation of cyanobacterial rbcS mRNAs requires the 38 kDa ribosomal protein S1 but not the Shine-Dalgarno sequence: Development of a cyanobacterial in vitro translation system. J. Biol. Chem., 281: 38314-38321 (2006)
305. Nakamura, M. and M. Sugiura: Translation efficiencies of synonymous codons are not always correlated with codon usage in tobacco chloroplasts. Plant J., 49: 128-134 (2007)
306. Yukawa M., H. Kuroda and M. Sugiura: A new in vitro translation system for non-radioactive assay from tobacco chloroplasts: effect of pre-mRNA processing on translation in vitro. Plant J., 49: 367-376 (2007)
307. Yukawa, Y., T. Mizutani, K. Akama and M. Sugiura: A survey of expressed tRNA genes in the chromosome I of Arabidopsis using an RNA polymerase III-dependent in vitro transcription system. Gene, 392: 7-13 (2007)
308. Sugita, C., K. Ogata, M. Shikata, H. Jikuya, J. Takano, M. Furumichi, M. Kanehisa, T. Omata, M. Sugiura and M. Sugita: Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization. Photosynthesis Res., 93: 55-67 (2007)
309. Kuroda, H., H. Suzuki, T. Kusumegi, T. Hirose, Y. Yukawa and M. Sugiura: Translation of psbC mRNAs starts from the downstream GUG, not the upstream AUG, and requires the extended Shine-Dalgarno sequence in tobacco chloroplasts. Plant Cell Physiol., 48: 1374-1378 (2007)
310. Plader, W., Y. Yukawa, M. Sugiura and S. Malepszy: The complete structure of the cucumber (Cucumis sativus L.) chloroplast genome: its composition and comparative analysis. Cell. Mol. Biol. Lett., 12: 584-594 (2007)
311. Sugiura, M.: RNA Editing in Chloroplasts. In "RNA Editing" (H.U. Goringer, ed), Springer, pp.125-144 (2008)
312. Yukawa, M. and M. Sugiura: Termination codon-dependent translation of partially overlapping ndhC-ndhK transcripts in chloroplasts. Proc. Natl. Acad. Sci. USA, 105, l9550-l9554 (2008)
313. Nakamura, M. and M. Sugiura: Selection of synonymous codons for better expression of recombinant proteins in tobacco chloroplasts. Plant Biotechnology, 26: 53-56 (2009)