湯川研究室（文献リスト）

業績リスト（学術論文）

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LinkIconGoogle Scholar Citations (Yasushi Yukawa)

2000
Yasushi Yukawa, Mamoru Sugita, Nathalie Choisne, Ian Small and Masahiro Sugiura. (2000) The TATA motif, the CAA motif and the poly(T) transcription termination motif are all important for transcription re-initiation on plant tRNA genes. The Plant Journal, 22: 439-447. (LinkIconPMID: 10849359)
Kazuhito Akama, Volker Junker, Yasushi Yukawa, Masahiro Sugiura and Hildburg Beier. (2000) Splicing of Arabidopsis tRNAMet precursors in tobacco cell and wheat germ extracts. Plant Molecular Biology, 44: 155-165. (LinkIconPMID: 11117259)
2001
Philippe Arnaud, Yasushi Yukawa, Laurence Lavie, Thierry Pelissier, Masahiro Sugiura and Jean-Marc Deragon. (2001) Analysis of the SINE S1 Pol III promoter from Brassica; impact of methylation and influence of external sequences. The Plant Journal, 26: 295-305. (LinkIconPMID: 11439118)
Yasushi Yukawa, Hao Fan, Kazuo Akama, Hildburg Beier, Hans J. Gross and Masahiro Sugiura. (2001) A tobacco nuclear extract supporting transcription, processing, splicing and modification of plant intron-containing tRNA precursors. The Plant Journal, 28: 583-594. (LinkIconPMID: 11849597)
2002
Olivier Mathieu, Yasushi Yukawa, Masahiro Sugiura, Georges Picard and Sylvette Tourmente. (2002) 5S rRNA genes expression is not inhibited by DNA methylation in Arabidopsis. The Plant Journal, 29: 313-323. (LinkIconPMID: 11844108)
C. Cloix, S. Tutois, Y. Yukawa, O. Mathieu, C. Cuvillier, M. C. Espagnol, G. Picard and S. Tourmente. (2002) Analysis of the 5S RNA pool in Arabidopsis thaliana: RNAs are heterogeneous and only two of the genomic 5S loci produce mature 5S RNA. Genome Research, 12: 132-144. (LinkIconPMID: 11779838)
Yasushi Yukawa, Jarolav Matousek, Michael Grimm, Lukas Vrba, Gerhart Steger, Masahiro Sugiura and Hildburg Beier. (2002) Plant 7SL RNA and tRNATyr genes with inserted antisense sequences are efficiently expressed in tobacco nuclear extract. Plant Molecular Biology, 50: 713-723. (LinkIconPMID: 12374302)
Keiko Hasegawa, Yasushi Yukawa, Mamoru Sugita and Masahiro Sugiura. (2002) Organization and transcription of the gene family encoding chlorophyll a/b-binding proteins in Nicotiana sylvestris. Gene, 289: 161-168. (LinkIconPMID: 12036594)
2003
Catherine Cloix, Yasushi Yukawa, Sylvie Tutois, Masahiro Sugiura, Sylvette Tourmente. (2003) In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 5S rRNA genes. The Plant Journal, 35: 251-261. (LinkIconPMID: 12848829)
Tadamasa Sasaki, Yasushi Yukawa, Tetsuya Miyamoto, Junich Obokata and Masahiro Sugiura. (2003) Identification of RNA editing sites in chloroplasts transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing. Mol. Biol. Evol., 20:1028-1035. (LinkIconPMID: 12716996)
Keiko Hasegawa, Yasushi Yukawa and Masahiro Sugiura. (2003) In vitro analysis of transcripton initiation and termination from the Lhcb1 gene family in Nicotiana sylvestris: detection of transcription termination sites. The Plant Journal, 33: 1063-1072. (LinkIconPMID: 12631330)
Keiko Hasegawa, Yasushi Yukawa, Junichi Obokata and Masahiro Sugiura. (2003) A tRNALeu-like sequence within the promoter of an Arabidopsis clock-regulated gene is functional: efficient transcription by an RNA polymerase III-dependent in vitro transcription system. Gene, 307: 133-139. (LinkIconPMID: 12706895)
Olivier Mathieu, Yasushi Yukawa, Jose-Luis Prieto, Isabelle Vaillant, Masahiro Sugiura and Sylvette Tourmente. (2003) Identification and characterization of transcription factor IIIA and ribosomal protein L5 from Arabidopsis thaliana. Nucleic Acids Research, 31: 2424-2433. (LinkIconPMID: 12711688)
2004
Misato Inada, Tadamasa Sasaki, Maki Yukawa, Takahiko Tsudzuki and Masahiro Sugiura. (2004) A systematic search for RNA editing sites in pea chloroplasts: an editing event causes diversification from the evolutionarily conserved amino acid sequence. Plant Cell Physiol., 45:1615-1622. (LinkIconPMID: 15574837)
2005
Yasushi Yukawa, Martha Felis, Markus Englert, Michael Stojanov, Jaroslav Matousek, Hildburg Beier and Masahiro Sugiura. (2005) Plant 7SL RNA genes belong to type 4 of RNA polymerase III-dependent genes that are composed of mixed promoters. The Plant Journal, 43: 97-106. (LinkIconPMID: 15960619)
Maki Yukawa, Takahiko Tsudzuki and Masahiro Sugiura. (2005) The 2005 Version of the Chloroplast DNA Sequence from Tobacco (Nicotiana tabacum) (Updates), Plant Molecular Biology Reporter, 23:1-7. (LinkIconSpringerLink)
2006
Maki Yukawa, Takahiko Tsudzuki and Masahiro Sugiura. (2006) The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum. Mol Genet. Genomics, 275:367-373. (LinkIconPMID: 16435119)
Giorgio Dieci, Yasushi Yukawa, Mircko Alzapiedi, Elisa Guffanti, Roberto Ferrari, Masahiro Sugiura and Simone Ottonello. (2006) Distinct modes of TATA box utilization by the RNA polymerase III transcription machineries from budding yeast and higher plants. Gene, 379:12-25. (LinkIconPMID: 16839711)
Tadamasa Sasaki, Yasushi Yukawa, Tatsuya Wakasugi, Kyoji Yamada and Masahiro Sugiura. (2006) A simple in vitro RNA editing assay for chloroplast transcripts using fluorescent dideoxynucleotides: Distinct types of sequence elements required for editing of ndh transcripts. The Plant Journal, 47:802-810. (LinkIconPMID: 16856984)
2007
Maki Yukawa, Hiroshi Kuroda and Masahiro Sugiura. (2007) A new in vitro translation system for non-radioactive assay from tobacco chloroplasts: effect of pre-mRNA processing on translation in vitro. The Plant Journal, 49: 367-376. (LinkIconPMID: 17156414)
Yasushi Yukawa, Takaharu Mizutani, Kazuhito Akama and Masahiro Sugiura. (2007) A survey of expressed tRNA genes in the chromosome I of Arabidopsis using an RNA polymerase III-dependent in vitro transcription system. Gene, 392: 7-13. (LinkIconPMID: 17157999)
Wojchech Plader, Yasushi Yukawa, Masahiro Sugiura and Stefan Malepszy. (2007) The complete structure of the cucumber (Cucumis sativus L.) chloroplast genome: Its composition and comparative analysis. Cellular & Molecular Biology Letters, 12: 584-594. (LinkIconPMID: 17607527)
Hiroshi Kuroda, Haruka Suzuki, Takahiro Kusumegi, Tetsuro Hirose, Yasushi Yukawa and Masahiro Sugiura. (2007) Translation of psbC mRNAs starts from the downstream GUG, not the upstream AUG, and requires the extended Shine-Dalgarno sequence in tobacco chloroplast. Plant Cell Physiology, 48: 1374-1378. (LinkIconPMID: 17664183)
2008
Maki Yukawa and Masahiro Sugiura. (2008) Termination codon-dependent translation of partially overlapping ndhC-ndhK transcripts in chloroplasts. Proc. Natl. Acad. Sci. USA. 105: 19550-19554. (LinkIconPMID: 19033452)
2011
Yasushi Yukawa, Giorgio Dieci, Mircko Alzapiedi, Asako Hiraga, Katsuaki Hirai, Yoshiharu Yamamoto and Masahiro Sugiura.(2011) A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes. Genomics, 97:166-172. (LinkIconPMID: 21147216)
Haruka Suzuki, Hiroshi Kuroda, Yasushi Yukawa and Masahiro Sugiura. (2011) The downstream atpE cistron is efficiently translated via its own cis-element in partially overlapping atpB-atpE dicistronic mRNAs in chloroplasts. Nucleic Acids Research, 39: 9405-9412. (LinkIconPMID: 21846772)
2012
Yuka Adachi, Hiroshi Kuroda, Yasushi Yukawa and Masahiro Sugiura. (2012) Translation of partially overlapping psbD-psbC mRNAs in chloroplasts: the role of 5'-processing and translational coupling. Nucleic Acids Research, 40: 3152-3158. (LinkIconPMID: 22156163)
Yuhta Nomura, Taito Takabayashi, Hiroshi Kuroda, Yasushi Yukawa, Kwanchanok Sattasuk, Mitsuru Akita, Akira Nozawa and Yuzuru Tozawa. (2012) ppGpp inhibits peptide elongation cycle of chloroplast translation system in vitro. Plant Mol. Biol., 78:185-196. (LinkIconPMID: 22108865)
Juan Wu, Toshihiro Okada, Toru Fukushima, Takahiko Tsudzuki, Masahiro Sugiura and Yasushi Yukawa. (2012) A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis. RNA Biology, 9: 302-313. (LinkIconPMID: 22336715)
Elodie Layat, Sylviane Cotterell, Isabelle Vaillant, Yasushi Yukawa, Sylvie Tutois, Sylvette Tourmente. (2012) Transcript levels, alternative splicing and proteolytic cleavage of TFIIIA control 5S rRNA accumulation during Arabidopsis thaliana development. The Plant Journal, 71: 35-44. (LinkIconPMID: 22353599)
2013
Yasushi Yukawa, Kazuhito Akama, Kanta Noguchi, Masaaki Komiya and Masahiro Sugiura. (2013) The context of transcription start site regions is crucial for transcription of a plant tRNALys(UUU) gene group both in vitro and in vivo. Gene, 512: 286-293. (LinkIconPMID: 23103832)
Maki Yukawa, Masahiro Sugiura. (2013) Additional pathway to translate the downstream ndhK cistron in partially overlapping ndhC-ndhK mRNAs in chloroplasts. Proc. Natl. Acad. Sci. USA. Epub ahead of print. (LinkIconPMID: 23509265)
2016
Ayaka Ido, Shinya Iwata, Yuka Iwata, Hisako Igarashi, Takahiro Hamada, Seiji Sonobe, Masahiro Sugiura and Yasushi Yukawa. (2015) Arabidopsis Pol II-dependent in vitro transcription system reveals role of chromatin for light-inducible rbcS gene transcription. Plant Physiology,170: 642-652. LinkIconPMID: 26662274